PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00011.1_g00044.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 374aa    MW: 42328.9 Da    PI: 4.5643
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00011.1_g00044.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM682.7e-21101273128
                      NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkat 86 
                               G+rFhPtdeel+ +yL k v +k+  + + i+  d+y + +Pw+L +     ++  yfF++ +kk++  ++k r  t  g W++ 
  Sme2.5_00011.1_g00044.1  10 LGVRFHPTDEELI-RYLIKFVCTKNYFF-DDIEIEDLYGSkKPWELLED---LSEVKYFFTQLKKKKSDHSNKIRkLTGGGKWRSL 90 
                              69***********.9******9999777.6699999997659****633...34566*****99999988888776899******* PP

                      NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               k k+v     + vg+kkt  + +++    ++++W+m ey+l
  Sme2.5_00011.1_g00044.1  91 DKGKRVGP---KCVGIKKTYRYVDNQVV--HNASWIMREYSL 127
                              **999976...89*********955554..59********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.06E-205132IPR003441NAC domain
PROSITE profilePS5100522.6038154IPR003441NAC domain
PfamPF023656.3E-1511127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MMNEIPNPLL GVRFHPTDEE LIRYLIKFVC TKNYFFDDIE IEDLYGSKKP WELLEDLSEV  60
KYFFTQLKKK KSDHSNKIRK LTGGGKWRSL DKGKRVGPKC VGIKKTYRYV DNQVVHNASW  120
IMREYSLDEK VISLLRKQVL IKHEDFVLRL IKVKQSGDHV PKDADVVTDP MISSMATEPQ  180
WPIYSDESGY GCQQIVMCPT VNEGHSNAGL VQNMESGYGY QLLPQMVTCM MNQGNTNAEL  240
YQSLATEPQW PIYSDGGDQF SQQTVMCPMV NEGNNNAGLC DEQVQNIESG YGYQLLPQMM  300
NQGNMNAELY EQVQNVESGY GCQLPPQMVM CGTGMVNEGN INAELVQNVE ETTPSVLQSS  360
SDETTSTTVI NNDE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010312399.13e-64PREDICTED: uncharacterized protein LOC104644424
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10426625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.12e-20NAC domain containing protein 2